IL_3J79_044

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J79_044 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.2859

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

3J79|1|A|G|1134
3J79|1|A|G|1135
3J79|1|A|A|1136
3J79|1|A|C|1139
*
3J79|1|A|G|1158
3J79|1|A|A|1159
3J79|1|A|C|1160
3J79|1|A|C|1161

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein uL16

Chain R

60S ribosomal protein uL18