IL_3J79_144

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAC*GAA

Length

8 nucleotides

Bulged bases

3J79|1|A|A|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J79_144 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.172

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

3J79|1|A|U|1650
3J79|1|A|C|1651
3J79|1|A|A|1652
3J79|1|A|A|1653
3J79|1|A|C|1654
*
3J79|1|A|G|1662
3J79|1|A|A|1663
3J79|1|A|A|1664

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein eL19

Chain W

60S ribosomal protein uL22

Chain e

60S ribosomal protein eL39