IL_3J7P_186

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

3J7P|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7P_186 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.1367

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

3J7P|1|S2|G|665
3J7P|1|S2|U|666
3J7P|1|S2|U|667
3J7P|1|S2|A|668
3J7P|1|S2|A|669
3J7P|1|S2|A|670
3J7P|1|S2|A|671
*
3J7P|1|S2|U|1161
3J7P|1|S2|C|1162

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SX

Ribosomal protein uS12

Chain Sa

Ribosomal protein eS26