IL_3J7P_293

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

3J7P|1|S2|C|1331, 3J7P|1|S2|U|1494, 3J7P|1|S2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7P_293 not in the Motif Atlas

Homologous match to IL_8P9A_439

Geometric discrepancy: 0.2042

The information below is about IL_8P9A_439

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86012.1

Basepair signature

cWW-tHS-tWH-cWH-cWW-L-L-cWW

Number of instances in this motif group

1

Unit IDs

3J7P|1|S2|U|1329
3J7P|1|S2|G|1330
3J7P|1|S2|C|1331
3J7P|1|S2|A|1332
3J7P|1|S2|U|1333
3J7P|1|S2|G|1334
3J7P|1|S2|G|1335
*
3J7P|1|S2|U|1492
3J7P|1|S2|C|1493
3J7P|1|S2|U|1494
3J7P|1|S2|G|1495
3J7P|1|S2|U|1496
3J7P|1|S2|G|1497
3J7P|1|S2|A|1498
3J7P|1|S2|U|1499
3J7P|1|S2|G|1500

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 4

Eukaryotic elongation factor 2

Chain SD

Ribosomal protein uS3

Chain SK

Ribosomal protein eS10

Chain SU

Ribosomal protein uS10

Chain Sd

Ribosomal protein uS14

Chain Sf

Ribosomal protein eS31