IL_3J8G_054

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

3J8G|1|B|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_054 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1748

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

3J8G|1|B|C|1208
3J8G|1|B|U|1209
3J8G|1|B|G|1210
3J8G|1|B|C|1211
3J8G|1|B|G|1212
3J8G|1|B|A|1213
3J8G|1|B|A|1214
3J8G|1|B|G|1215
*
3J8G|1|B|U|1234
3J8G|1|B|G|1235
3J8G|1|B|G|1236
3J8G|1|B|A|1237
3J8G|1|B|G|1238

Current chains

Chain B

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20