IL_3J8G_078

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

3J8G|1|B|A|1801, 3J8G|1|B|C|1816, 3J8G|1|B|U|1820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_078 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1801

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3J8G|1|B|U|1798
3J8G|1|B|G|1799
3J8G|1|B|C|1800
3J8G|1|B|A|1801
3J8G|1|B|A|1802
3J8G|1|B|A|1803
3J8G|1|B|C|1804
*
3J8G|1|B|G|1813
3J8G|1|B|G|1814
3J8G|1|B|A|1815
3J8G|1|B|C|1816
3J8G|1|B|G|1817
3J8G|1|B|U|1818
3J8G|1|B|A|1819
3J8G|1|B|U|1820
3J8G|1|B|A|1821

Current chains

Chain B

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2