IL_3J8G_137

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

3J8G|1|B|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J8G_137 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1581

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

3J8G|1|B|C|2636
3J8G|1|B|U|2637
3J8G|1|B|G|2638
3J8G|1|B|A|2639
3J8G|1|B|G|2640
*
3J8G|1|B|C|2774
3J8G|1|B|G|2775
3J8G|1|B|A|2776
3J8G|1|B|G|2777
3J8G|1|B|A|2778
3J8G|1|B|U|2779
3J8G|1|B|G|2780
3J8G|1|B|A|2781
3J8G|1|B|G|2782

Current chains

Chain B

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13