IL_3J92_012
3D structure
- PDB id
- 3J92 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure and assembly pathway of the ribosome quality control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCGUGG*CG
- Length
- 8 nucleotides
- Bulged bases
- 3J92|1|5|C|185, 3J92|1|5|G|188
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J92_012 not in the Motif Atlas
- Geometric match to IL_1NBS_009
- Geometric discrepancy: 0.2526
- The information below is about IL_1NBS_009
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_71421.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3J92|1|5|U|184
3J92|1|5|C|185
3J92|1|5|G|186
3J92|1|5|U|187
3J92|1|5|G|188
3J92|1|5|G|189
*
3J92|1|5|C|252
3J92|1|5|G|253
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain L
- eL13
- Chain Y
- uL24
- Chain j
- eL37
Coloring options: