IL_3J92_150
3D structure
- PDB id
- 3J92 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure and assembly pathway of the ribosome quality control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J92_150 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.102
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
3J92|1|5|C|4596
3J92|1|5|U|4597
3J92|1|5|C|4598
3J92|1|5|A|4599
3J92|1|5|G|4600
3J92|1|5|U|4601
3J92|1|5|A|4602
3J92|1|5|C|4603
*
3J92|1|5|G|4608
3J92|1|5|G|4609
3J92|1|5|A|4610
3J92|1|5|A|4611
3J92|1|5|C|4612
3J92|1|5|C|4613
3J92|1|5|G|4614
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain H
- uL6
- Chain V
- uL14
- Chain m
- eL40
- Chain v
- NEMF
- Chain w
- Listerin
- Chain x
- Listerin
Coloring options: