IL_3J9M_005

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_005 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.3641

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

3J9M|1|A|A|1863
3J9M|1|A|A|1864
3J9M|1|A|C|1865
*
3J9M|1|A|G|2300
3J9M|1|A|U|2301

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

uL4m

Chain R

bL20m

Chain c

mL44

Chain i

mL51