IL_3J9M_006

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_006 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.3059

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

3J9M|1|A|C|1875
3J9M|1|A|U|1876
*
3J9M|1|A|A|1897
3J9M|1|A|A|1898
3J9M|1|A|G|1899

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

uL4m

Chain M

uL15m

Chain g

mL49

Chain i

mL51

Chain o

mL63