IL_3J9M_020

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

3J9M|1|A|A|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_020 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.1976

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

3J9M|1|A|G|2145
3J9M|1|A|A|2146
3J9M|1|A|G|2147
*
3J9M|1|A|C|2254
3J9M|1|A|C|2255

Current chains

Chain A

16S rRNA

Nearby chains

Chain R

bL20m

Chain S

bL21m

Chain T

uL22m

Chain Z

uL30m

Chain b

mL43

Chain j

mL52