IL_3J9M_028

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UA*UUA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_028 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.321

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

3J9M|1|A|U|2465
3J9M|1|A|A|2466
*
3J9M|1|A|U|2660
3J9M|1|A|U|2661
3J9M|1|A|A|2662

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

uL3m

Chain O

bL17m

Chain Q

bL19m