IL_3J9M_059

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9M_059 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2295

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

3J9M|1|A|C|3119
3J9M|1|A|C|3120
3J9M|1|A|C|3121
3J9M|1|A|U|3122
3J9M|1|A|G|3123
3J9M|1|A|U|3124
3J9M|1|A|A|3125
3J9M|1|A|C|3126
*
3J9M|1|A|G|3131
3J9M|1|A|G|3132
3J9M|1|A|A|3133
3J9M|1|A|C|3134
3J9M|1|A|A|3135
3J9M|1|A|A|3136
3J9M|1|A|G|3137

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

uL14m