IL_3J9W_020

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

3J9W|1|AA|A|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9W_020 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1412

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

3J9W|1|AA|C|578
3J9W|1|AA|G|579
3J9W|1|AA|U|580
3J9W|1|AA|A|581
3J9W|1|AA|A|582
3J9W|1|AA|A|583
3J9W|1|AA|G|584
*
3J9W|1|AA|C|890
3J9W|1|AA|G|891

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein uS8

Chain AL

30S ribosomal protein uS12