IL_3J9Z_014

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_014 not in the Motif Atlas

Geometric match to IL_5J7L_257

Geometric discrepancy: 0.1144

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3J9Z|1|LA|C|564
3J9Z|1|LA|C|565
3J9Z|1|LA|U|566
*
3J9Z|1|LA|A|575
3J9Z|1|LA|U|576
3J9Z|1|LA|G|577

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LH

50S ribosomal protein L15

Chain LO

50S ribosomal protein L20

Chain LP

50S ribosomal protein L21