IL_3J9Z_068

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_068 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2108

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

3J9Z|1|LA|U|1720
3J9Z|1|LA|G|1721
3J9Z|1|LA|A|1722
3J9Z|1|LA|G|1723
3J9Z|1|LA|G|1724
3J9Z|1|LA|U|1725
*
3J9Z|1|LA|A|1735
3J9Z|1|LA|U|1736
3J9Z|1|LA|G|1737
3J9Z|1|LA|G|1738
3J9Z|1|LA|A|1739
3J9Z|1|LA|G|1740

Current chains

Chain LA

23S ribosomal RNA

Nearby chains