IL_3J9Z_071

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

3J9Z|1|LA|A|1801, 3J9Z|1|LA|C|1816, 3J9Z|1|LA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_071 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0969

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3J9Z|1|LA|U|1798
3J9Z|1|LA|G|1799
3J9Z|1|LA|C|1800
3J9Z|1|LA|A|1801
3J9Z|1|LA|A|1802
3J9Z|1|LA|A|1803
3J9Z|1|LA|C|1804
*
3J9Z|1|LA|G|1813
3J9Z|1|LA|G|1814
3J9Z|1|LA|A|1815
3J9Z|1|LA|C|1816
3J9Z|1|LA|G|1817
3J9Z|1|LA|U|1818
3J9Z|1|LA|A|1819
3J9Z|1|LA|U|1820
3J9Z|1|LA|A|1821

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LN

50S ribosomal protein L2

Chain SA

Small subunit ribosomal RNA; SSU rRNA