IL_3J9Z_105

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

3J9Z|1|LA|U|2689, 3J9Z|1|LA|U|2690

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_105 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.1275

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

3J9Z|1|LA|U|2687
3J9Z|1|LA|G|2688
3J9Z|1|LA|U|2689
3J9Z|1|LA|U|2690
3J9Z|1|LA|C|2691
*
3J9Z|1|LA|G|2718
3J9Z|1|LA|G|2719
3J9Z|1|LA|U|2720
3J9Z|1|LA|A|2721
3J9Z|1|LA|G|2722

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LJ

50S ribosomal protein L17

Chain LM

50S ribosomal protein L19

Chain LX

50S ribosomal protein L3