IL_3J9Z_134

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACAAUG*UGAU

Length

10 nucleotides

Bulged bases

3J9Z|1|SA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_134 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.2614

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

3J9Z|1|SA|A|371
3J9Z|1|SA|C|372
3J9Z|1|SA|A|373
3J9Z|1|SA|A|374
3J9Z|1|SA|U|375
3J9Z|1|SA|G|376
*
3J9Z|1|SA|U|387
3J9Z|1|SA|G|388
3J9Z|1|SA|A|389
3J9Z|1|SA|U|390

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SP

30S ribosomal protein S16