IL_3J9Z_185

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGU*AUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Z_185 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2513

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

3J9Z|1|LA|G|283
3J9Z|1|LA|U|284
3J9Z|1|LA|G|285
3J9Z|1|LA|U|286
*
3J9Z|1|LA|A|354
3J9Z|1|LA|U|355
3J9Z|1|LA|G|356
3J9Z|1|LA|C|357

Current chains

Chain LA

23S ribosomal RNA

Nearby chains