IL_3JA1_027

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCACU*AAACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_027 not in the Motif Atlas

Geometric match to IL_5TBW_062

Geometric discrepancy: 0.3845

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

3JA1|1|LA|A|863
3JA1|1|LA|G|864
3JA1|1|LA|C|865
3JA1|1|LA|A|866
3JA1|1|LA|C|867
3JA1|1|LA|U|868
*
3JA1|1|LA|A|909
3JA1|1|LA|A|910
3JA1|1|LA|A|911
3JA1|1|LA|C|912
3JA1|1|LA|U|913

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LO

50S ribosomal protein L16