IL_3JA1_103

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

3JA1|1|LA|U|2689, 3JA1|1|LA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_103 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.1495

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

3JA1|1|LA|U|2687
3JA1|1|LA|G|2688
3JA1|1|LA|U|2689
3JA1|1|LA|U|2690
3JA1|1|LA|C|2691
*
3JA1|1|LA|G|2718
3JA1|1|LA|G|2719
3JA1|1|LA|U|2720
3JA1|1|LA|A|2721
3JA1|1|LA|G|2722

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LE

50S ribosomal protein L3

Chain LP

50S ribosomal protein L17

Chain LR

50S ribosomal protein L19