IL_3JA1_150

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

3JA1|1|SA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_150 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1842

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

3JA1|1|SA|U|684
3JA1|1|SA|G|685
3JA1|1|SA|U|686
3JA1|1|SA|A|687
3JA1|1|SA|G|688
*
3JA1|1|SA|C|699
3JA1|1|SA|G|700
3JA1|1|SA|U|701
3JA1|1|SA|A|702
3JA1|1|SA|G|703
3JA1|1|SA|A|704
3JA1|1|SA|G|705
3JA1|1|SA|A|706

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain SK

30S ribosomal protein S11