IL_3JA1_174

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JA1_174 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.2137

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

3JA1|1|SA|G|1405
3JA1|1|SA|U|1406
3JA1|1|SA|C|1407
*
3JA1|1|SA|G|1494
3JA1|1|SA|U|1495
3JA1|1|SA|C|1496

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain S1

mRNA

Chain S3

Elongation factor G