IL_3JAN_093

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_093 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2955

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3JAN|1|5|C|2589
3JAN|1|5|G|2590
3JAN|1|5|A|2591
3JAN|1|5|U|2592
3JAN|1|5|C|2593
*
3JAN|1|5|G|2752
3JAN|1|5|G|2753
3JAN|1|5|G|2754
3JAN|1|5|A|2755
3JAN|1|5|G|2756

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain Z

Ribosomal protein eL27

Chain g

Ribosomal protein eL34