IL_3JAN_138

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

3JAN|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_138 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1985

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3JAN|1|5|C|4582
3JAN|1|5|C|4583
3JAN|1|5|A|4584
3JAN|1|5|U|4585
*
3JAN|1|5|A|4717
3JAN|1|5|G|4718
3JAN|1|5|G|4719
3JAN|1|5|C|4720
3JAN|1|5|G|4721

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain O

Ribosomal protein uL13