IL_3JAN_201

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_201 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.1562

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3JAN|1|S2|G|928
3JAN|1|S2|G|929
3JAN|1|S2|C|930
3JAN|1|S2|C|931
*
3JAN|1|S2|G|1010
3JAN|1|S2|A|1011
3JAN|1|S2|A|1012
3JAN|1|S2|U|1013

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SB

Ribosomal protein eS1

Chain SN

Ribosomal protein uS15

Chain Sb

Ribosomal protein eS27