IL_3JAN_212
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 3JAN|1|S2|C|1215, 3JAN|1|S2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_212 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1896
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
3JAN|1|S2|A|1214
3JAN|1|S2|C|1215
3JAN|1|S2|C|1216
3JAN|1|S2|A|1217
*
3JAN|1|S2|U|1681
3JAN|1|S2|C|1682
3JAN|1|S2|C|1683
3JAN|1|S2|C|1684
3JAN|1|S2|U|1685
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain SF
- Ribosomal protein uS7
- Chain SQ
- Ribosomal protein uS9
- Chain Sa
- Ribosomal protein eS26
- Chain Sc
- Ribosomal protein eS28
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