IL_3JAN_220
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CGUU*AACAG
- Length
- 9 nucleotides
- Bulged bases
- 3JAN|1|S2|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_220 not in the Motif Atlas
- Geometric match to IL_1D4R_003
- Geometric discrepancy: 0.2693
- The information below is about IL_1D4R_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3JAN|1|S2|C|1337
3JAN|1|S2|G|1338
3JAN|1|S2|U|1339
3JAN|1|S2|U|1340
*
3JAN|1|S2|A|1486
3JAN|1|S2|A|1487
3JAN|1|S2|C|1488
3JAN|1|S2|A|1489
3JAN|1|S2|G|1490
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SC
- Ribosomal protein uS5
- Chain SD
- Ribosomal protein uS3
- Chain SQ
- Ribosomal protein uS9
- Chain SU
- Ribosomal protein uS10
- Chain Sd
- Ribosomal protein uS14
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