IL_3JAN_246

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCGCU*GGCG

Length

9 nucleotides

Bulged bases

3JAN|1|5|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_246 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3305

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

3JAN|1|5|C|180
3JAN|1|5|C|181
3JAN|1|5|G|182
3JAN|1|5|C|183
3JAN|1|5|U|184
*
3JAN|1|5|G|253
3JAN|1|5|G|254
3JAN|1|5|C|255
3JAN|1|5|G|256

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain h

Ribosomal protein uL29