IL_3JAN_257
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CGAAGC*GUGGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_257 not in the Motif Atlas
- Geometric match to IL_7A0S_018
- Geometric discrepancy: 0.2188
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_06136.2
- Basepair signature
- cWW-tHS-cWW-tHS-tSH-tSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
3JAN|1|5|C|1551
3JAN|1|5|G|1552
3JAN|1|5|A|1553
3JAN|1|5|A|1554
3JAN|1|5|G|1555
3JAN|1|5|C|1556
*
3JAN|1|5|G|1571
3JAN|1|5|U|1572
3JAN|1|5|G|1573
3JAN|1|5|G|1574
3JAN|1|5|A|1575
3JAN|1|5|G|1576
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein uL2
- Chain R
- Ribosomal protein eL19
- Chain p
- Ribosomal protein eL43
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