IL_3JAN_258
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- AUUAGA*UAUUCU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_258 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3775
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
3JAN|1|5|A|1746
3JAN|1|5|U|1747
3JAN|1|5|U|1748
3JAN|1|5|A|1749
3JAN|1|5|G|1750
3JAN|1|5|A|1751
*
3JAN|1|5|U|1779
3JAN|1|5|A|1780
3JAN|1|5|U|1781
3JAN|1|5|U|1782
3JAN|1|5|C|1783
3JAN|1|5|U|1784
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Ribosomal protein uL18
- Chain I
- Ribosomal protein uL16
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