IL_3JBN_018

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_018 not in the Motif Atlas

Geometric match to IL_5H1K_001

Geometric discrepancy: 0.1593

The information below is about IL_5H1K_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

3JBN|1|A|C|417
3JBN|1|A|A|418
3JBN|1|A|U|419
*
3JBN|1|A|A|426
3JBN|1|A|A|427
3JBN|1|A|G|428

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein uL14

Chain H

40S ribosomal protein eS6