IL_3JBN_025

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

3JBN|1|A|A|586, 3JBN|1|A|U|588

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_025 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1627

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3JBN|1|A|G|569
3JBN|1|A|U|570
3JBN|1|A|G|571
3JBN|1|A|C|572
3JBN|1|A|C|573
3JBN|1|A|A|574
3JBN|1|A|G|575
*
3JBN|1|A|C|582
3JBN|1|A|G|583
3JBN|1|A|G|584
3JBN|1|A|U|585
3JBN|1|A|A|586
3JBN|1|A|A|587
3JBN|1|A|U|588
3JBN|1|A|U|589
3JBN|1|A|C|590

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein eS30

Chain D

40S ribosomal protein uS3

Chain Q

40S ribosomal protein uS12