IL_3JBN_037

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGCU*GCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_037 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2044

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

3JBN|1|A|A|883
3JBN|1|A|G|884
3JBN|1|A|C|885
3JBN|1|A|U|886
*
3JBN|1|A|G|916
3JBN|1|A|C|917
3JBN|1|A|U|918
3JBN|1|A|U|919

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19

Chain V

40S ribosomal protein uS17