IL_3JBN_050
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGAGUAUU*AGAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_050 not in the Motif Atlas
- Geometric match to IL_4LFB_034
- Geometric discrepancy: 0.1515
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
3JBN|1|A|C|1212
3JBN|1|A|G|1213
3JBN|1|A|A|1214
3JBN|1|A|G|1215
3JBN|1|A|U|1216
3JBN|1|A|A|1217
3JBN|1|A|U|1218
3JBN|1|A|U|1219
*
3JBN|1|A|A|1230
3JBN|1|A|G|1231
3JBN|1|A|A|1232
3JBN|1|A|A|1233
3JBN|1|A|A|1234
3JBN|1|A|G|1235
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Ag
- 60S ribosomal protein eL41
- Chain Q
- 40S ribosomal protein uS12
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