IL_3JBN_066

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGGAUA*UUGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_066 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1292

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3JBN|1|A|G|1837
3JBN|1|A|G|1838
3JBN|1|A|G|1839
3JBN|1|A|A|1840
3JBN|1|A|U|1841
3JBN|1|A|A|1842
*
3JBN|1|A|U|1863
3JBN|1|A|U|1864
3JBN|1|A|G|1865
3JBN|1|A|A|1866
3JBN|1|A|A|1867
3JBN|1|A|C|1868

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS13

Chain Y

40S ribosomal protein eS19