IL_3JBN_215

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUG*CUUAUC

Length

9 nucleotides

Bulged bases

3JBN|1|AA|U|3769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_215 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.2224

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3JBN|1|AA|G|3720
3JBN|1|AA|U|3721
3JBN|1|AA|G|3722
*
3JBN|1|AA|C|3765
3JBN|1|AA|U|3766
3JBN|1|AA|U|3767
3JBN|1|AA|A|3768
3JBN|1|AA|U|3769
3JBN|1|AA|C|3770

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein eL24

Chain A7

60S ribosomal protein eL31

Chain AE

60S ribosomal protein uL3