IL_3JBO_019

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CCAAUU*AGAG

Length

10 nucleotides

Bulged bases

3JBO|1|A|G|465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_019 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.1109

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

3JBO|1|A|C|449
3JBO|1|A|C|450
3JBO|1|A|A|451
3JBO|1|A|A|452
3JBO|1|A|U|453
3JBO|1|A|U|454
*
3JBO|1|A|A|464
3JBO|1|A|G|465
3JBO|1|A|A|466
3JBO|1|A|G|467

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein eS24

Chain E

40S ribosomal protein uS4

Chain F

40S ribosomal protein eS4