IL_3JBO_023

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

3JBO|1|A|A|586, 3JBO|1|A|U|588

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_023 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1893

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3JBO|1|A|G|569
3JBO|1|A|U|570
3JBO|1|A|G|571
3JBO|1|A|C|572
3JBO|1|A|C|573
3JBO|1|A|A|574
3JBO|1|A|G|575
*
3JBO|1|A|C|582
3JBO|1|A|G|583
3JBO|1|A|G|584
3JBO|1|A|U|585
3JBO|1|A|A|586
3JBO|1|A|A|587
3JBO|1|A|U|588
3JBO|1|A|U|589
3JBO|1|A|C|590

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein eS30

Chain D

40S ribosomal protein uS3

Chain Q

40S ribosomal protein uS12