IL_3JBO_024
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 3JBO|1|A|A|626, 3JBO|1|A|A|627
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_024 not in the Motif Atlas
- Geometric match to IL_4V88_416
- Geometric discrepancy: 0.1213
- The information below is about IL_4V88_416
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.3
- Basepair signature
- cWW-L-cWW-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
3JBO|1|A|G|623
3JBO|1|A|U|624
3JBO|1|A|U|625
3JBO|1|A|A|626
3JBO|1|A|A|627
3JBO|1|A|A|628
3JBO|1|A|A|629
*
3JBO|1|A|U|1205
3JBO|1|A|C|1206
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein eS26
- Chain Ag
- 60S ribosomal protein eL41
- Chain Q
- 40S ribosomal protein uS12
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