IL_3JBO_035

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AGCU*GCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_035 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2297

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

3JBO|1|A|A|883
3JBO|1|A|G|884
3JBO|1|A|C|885
3JBO|1|A|U|886
*
3JBO|1|A|G|916
3JBO|1|A|C|917
3JBO|1|A|U|918
3JBO|1|A|U|919

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19