IL_3JBO_045
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UGAAG*CGUAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_045 not in the Motif Atlas
- Geometric match to IL_4V88_436
- Geometric discrepancy: 0.1844
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
3JBO|1|A|U|1059
3JBO|1|A|G|1060
3JBO|1|A|A|1061
3JBO|1|A|A|1062
3JBO|1|A|G|1063
*
3JBO|1|A|C|1079
3JBO|1|A|G|1080
3JBO|1|A|U|1081
3JBO|1|A|A|1082
3JBO|1|A|A|1083
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein eS26
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- 60S ribosomal protein uL2
- Chain P
- 40S ribosomal protein uS11
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