IL_3JBO_051
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 3JBO|1|A|C|1259, 3JBO|1|A|C|1260
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_051 not in the Motif Atlas
- Geometric match to IL_4V88_443
- Geometric discrepancy: 0.1432
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
3JBO|1|A|A|1258
3JBO|1|A|C|1259
3JBO|1|A|C|1260
3JBO|1|A|A|1261
*
3JBO|1|A|U|1914
3JBO|1|A|C|1915
3JBO|1|A|C|1916
3JBO|1|A|C|1917
3JBO|1|A|U|1918
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 5
- 40S ribosomal protein eS28
- Chain 7
- Transfer RNA; tRNA
- Chain I
- 40S ribosomal protein uS7
- Chain M
- 40S ribosomal protein uS9
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