IL_3JBO_056
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 3JBO|1|A|U|1678, 3JBO|1|A|G|1681
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_056 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1524
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
3JBO|1|A|U|1377
3JBO|1|A|G|1378
3JBO|1|A|G|1379
*
3JBO|1|A|U|1676
3JBO|1|A|C|1677
3JBO|1|A|U|1678
3JBO|1|A|G|1679
3JBO|1|A|U|1680
3JBO|1|A|G|1681
3JBO|1|A|A|1682
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein uS3
- Chain N
- 40S ribosomal protein uS10
- Chain O
- 40S ribosomal protein eS10
- Chain T
- 40S ribosomal protein uS14
Coloring options: