IL_3JBO_081
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UUUAGUAA*UGAACAA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_081 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1383
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JBO|1|AA|U|82
3JBO|1|AA|U|83
3JBO|1|AA|U|84
3JBO|1|AA|A|85
3JBO|1|AA|G|86
3JBO|1|AA|U|87
3JBO|1|AA|A|88
3JBO|1|AA|A|89
*
3JBO|1|AA|U|97
3JBO|1|AA|G|98
3JBO|1|AA|A|99
3JBO|1|AA|A|100
3JBO|1|AA|C|101
3JBO|1|AA|A|102
3JBO|1|AA|A|103
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein eL13
- Chain AO
- 60S ribosomal protein uL15
- Chain AP
- 60S ribosomal protein eL15
- Chain AS
- 60S ribosomal protein eL18
- Chain Ai
- 60S ribosomal protein eL44
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