IL_3JBO_108
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAGAG*CUAUUAGC
- Length
- 13 nucleotides
- Bulged bases
- 3JBO|1|AA|A|1052, 3JBO|1|AA|G|1056
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_108 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1562
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
3JBO|1|AA|G|924
3JBO|1|AA|A|925
3JBO|1|AA|G|926
3JBO|1|AA|A|927
3JBO|1|AA|G|928
*
3JBO|1|AA|C|1050
3JBO|1|AA|U|1051
3JBO|1|AA|A|1052
3JBO|1|AA|U|1053
3JBO|1|AA|U|1054
3JBO|1|AA|A|1055
3JBO|1|AA|G|1056
3JBO|1|AA|C|1057
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein uL4
- Chain AL
- 60S ribosomal protein eL13
- Chain AO
- 60S ribosomal protein uL15
- Chain AP
- 60S ribosomal protein eL15
- Chain Ac
- 60S ribosomal protein eL37
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