IL_3JBO_114

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

3JBO|1|AA|G|1027, 3JBO|1|AA|A|1039, 3JBO|1|AA|A|1040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_114 not in the Motif Atlas

Homologous match to IL_5TBW_033

Geometric discrepancy: 0.0819

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

3JBO|1|AA|G|1026
3JBO|1|AA|G|1027
3JBO|1|AA|G|1028
*
3JBO|1|AA|U|1038
3JBO|1|AA|A|1039
3JBO|1|AA|A|1040
3JBO|1|AA|U|1041
3JBO|1|AA|C|1042

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AP

60S ribosomal protein eL15

Chain AW

60S ribosomal protein uL22

Chain Ac

60S ribosomal protein eL37