IL_3JBO_128
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UGCCUAAA*UA
- Length
- 10 nucleotides
- Bulged bases
- 3JBO|1|AA|A|1306
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_128 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1669
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
3JBO|1|AA|U|1301
3JBO|1|AA|G|1302
3JBO|1|AA|C|1303
3JBO|1|AA|C|1304
3JBO|1|AA|U|1305
3JBO|1|AA|A|1306
3JBO|1|AA|A|1307
3JBO|1|AA|A|1308
*
3JBO|1|AA|U|1453
3JBO|1|AA|A|1454
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein uL30
- Chain A9
- 60S ribosomal protein eL33
- Chain AK
- 60S ribosomal protein uL13
- Chain AU
- 60S ribosomal protein eL20
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